Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX360775: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-213861' containing sample 'Unclassified bacteria hmp_mda_pilot_jcvi_0012'
4 ILLUMINA (Illumina HiSeq 2000) runs: 10.6M spots, 2.1G bases, 1.3Gb downloads

UUID: 2265ff6d-db45-4f39-8b2c-dfcfe450af72

Design: Illumina sequencing of Ruminococcaceae bacterium hmp_mda_pilot_jcvi_0012 via random selection

Submitted by: Broad Institute (BI)

Study: HMP reference genome

PRJNA217668 • SRP030606 • All experiments • All runs

Sample: Generic sample from Ruminococcaceae bacterium hmp_mda_pilot_jcvi_0012

SAMN00828721 • SRS300622 • All experiments • All runs

Organism: Ruminococcaceae bacterium hmp_mda_pilot_jcvi_0012

Library:

Name: Pond-213861

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 281567.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3SQPR

material_type: DNA:DNA Genomic

product_order: PDO-61

product_part_number: P-WG-0004

project: G28984

research_project: RP-129

root_sample_id: SM-1VE5K

sample_id: SM-3SQPR

work_request: 34390

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-01-14 13:15:17.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 4 runs, 10.6M spots, 2.1G bases, 1.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR1004181	2,610,616	527.3M	328.5Mb	2013-09-27
SRR1004183	2,596,413	524.5M	327.9Mb	2013-09-27
SRR1004184	2,720,276	549.5M	342.2Mb	2013-09-27
SRR1004185	2,647,951	534.9M	331.2Mb	2013-09-27

ID:: 509981

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